Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs6669542 | chr1:41525770 | T/G | 3.61E-12 | 489 | 17.7 | 17.73 | 14.93 | KM Plot |
| THCA | rs6669737 | chr1:41525890 | T/C | 3.61E-12 | 489 | 17.7 | 17.75 | 14.93 | KM Plot |
| THCA | rs6670635 | chr1:74814712 | G/A | 5.13E-9 | 490 | 15.93 | 16.4 | 15.3 | KM Plot |
| THCA | rs6670911 | chr1:74815036 | G/A | 4.73E-9 | 490 | 15.9 | 16.53 | 15.3 | KM Plot |
| THCA | rs6674290 | chr1:41561232 | C/G | 3.61E-12 | 489 | 17.7 | 17.75 | 14.93 | KM Plot |
| THCA | rs6674695 | chr1:224393942 | C/T | 7.27E-5 | 483 | 12.52 | 14.38 | 16.67 | KM Plot |
| THCA | rs6676 | chr1:156904818 | G/A | 5.16E-7 | 489 | 16.67 | 14.93 | 11.3 | KM Plot |
| THCA | rs6676241 | chr1:22453626 | T/C | 4.64E-7 | 482 | 15.33 | 18.2 | 6.87 | KM Plot |
| THCA | rs66765186 | chr1:156938340 | AT/A | 2.09E-6 | 484 | 16.63 | 15.67 | 11.48 | KM Plot |
| THCA | rs66774208 | chr11:57095574 | CAGA/C | 2.14E-11 | 489 | 16.27 | 14.77 | 20.77 | KM Plot |
| THCA | rs6678992 | chr1:22453842 | T/C | 4.68E-7 | 481 | 15.48 | 18.2 | 6.87 | KM Plot |
| THCA | rs6679479 | chr1:22454261 | T/A | 4.68E-7 | 481 | 15.48 | 18.2 | 6.87 | KM Plot |
| THCA | rs6679776 | chr1:156936282 | C/T | 4.06E-7 | 490 | 12.67 | 15.3 | 16.8 | KM Plot |
| THCA | rs66813720 | chr15:91047213 | CA/CAA | 6.72E-6 | 478 | 15.65 | 16.07 | 17.7 | KM Plot |
| THCA | rs66815376 | chr2:241543863 | C/T | 2.16E-11 | 485 | 15.9 | 15 | 19.27 | KM Plot |